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mpdu1b mannose-P-dolichol utilization defect 1b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112156494, updated on 10-Jul-2024

Summary

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Gene symbol
mpdu1b
Gene description
mannose-P-dolichol utilization defect 1b
See related
EnsemblRapid:ENSOMEG00005010375
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
mpdu1
Orthologs
human zebrafish all
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Genomic context

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See mpdu1b in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG18 NC_050529.1 (20987290..20990505)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096092.1 (3994990..3998209, complement)

Linkage Group LG18 - NC_050529.1Genomic Context describing neighboring genes Neighboring gene transmembrane 4 L six family member 21b Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene uncharacterized LOC118600057 Neighboring gene SRY-box transcription factor 19b Neighboring gene SUMO specific peptidase 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-P-dolichol utilization defect 1b
Names
mannose-P-dolichol utilization defect 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050529.1 Reference ASM292280v2 Primary Assembly

    Range
    20987290..20990505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024288802.2 → XP_024144570.1  mannose-P-dolichol utilization defect 1b

    UniProtKB/TrEMBL
    A0A3B3BAV5
    Related
    ENSOMEP00005023102.1, ENSOMET00005025542.1
    Conserved Domains (1) summary
    TIGR00951
    Location:48 → 243
    2A43; Lysosomal Cystine Transporter
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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