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si:dkey-121b10.7 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153860, updated on 10-Jul-2024

Summary

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Gene symbol
si:dkey-121b10.7
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
EnsemblRapid:ENSOMEG00005006532
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See si:dkey-121b10.7 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
2
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG19 NC_050530.1 (1817821..1844363, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096090.1 (1817816..1844175, complement)

Linkage Group LG19 - NC_050530.1Genomic Context describing neighboring genes Neighboring gene BRICHOS domain containing 5 Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene meiosis specific with OB-fold Neighboring gene methionine sulfoxide reductase B1b Neighboring gene neuralized E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050530.1 Reference ASM292280v2 Primary Assembly

    Range
    1817821..1844363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024284304.2 → XP_024140072.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A3B3BMA5, A0A834C7T2
    Related
    ENSOMEP00005013595.1, ENSOMET00005015231.1
    Conserved Domains (1) summary
    pfam00685
    Location:98 → 334
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases