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kirrel1b kirre like nephrin family adhesion molecule 1b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112150882, updated on 10-Jul-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
EnsemblRapid:ENSOMEG00005009609
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
15
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (30757634..30886489, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096074.1 (3059873..3188578)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112151507 Neighboring gene uncharacterized LOC118599954 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b
Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    30757634..30886489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024279413.2 → XP_024135181.1  kin of IRRE-like protein 1b isoform X2

    UniProtKB/TrEMBL
    A0A834C255
    Related
    ENSOMEP00005022109.1, ENSOMET00005024246.1
    Conserved Domains (5) summary
    cd05898
    Location:388 → 491
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:25 → 113
    IG; Immunoglobulin
    pfam13927
    Location:305 → 370
    Ig_3; Immunoglobulin domain
    cl11960
    Location:135 → 216
    Ig; Immunoglobulin domain
    cl28434
    Location:220 → 301
    I-set; Immunoglobulin I-set domain

  2. XM_024279406.2 → XP_024135174.1  kin of IRRE-like protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A3B3E319, A0A834C255
    Related
    ENSOMEP00005022144.1, ENSOMET00005024281.1
    Conserved Domains (5) summary
    cd05898
    Location:388 → 491
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:25 → 113
    IG; Immunoglobulin
    pfam13927
    Location:305 → 370
    Ig_3; Immunoglobulin domain
    cl11960
    Location:135 → 216
    Ig; Immunoglobulin domain
    cl28434
    Location:220 → 301
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

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