U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

polr2eb RNA polymerase II, I and III subunit E, b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112150256, updated on 10-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
polr2eb
Gene description
RNA polymerase II, I and III subunit E, b
See related
EnsemblRapid:ENSOMEG00005005048
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
polr2e
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See polr2eb in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG4 NC_050515.1 (25971295..25976140)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096086.1 (22031394..22036239, complement)

Linkage Group LG4 - NC_050515.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a Neighboring gene glutathione peroxidase 4a Neighboring gene Rho GTPase activating protein 45b Neighboring gene tight junction protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC1
Names
RNA polymerase II subunit E
polymerase (RNA) II (DNA directed) polypeptide E, b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050515.1 Reference ASM292280v2 Primary Assembly

    Range
    25971295..25976140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024278385.1 → XP_024134153.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1

    UniProtKB/TrEMBL
    A0A3B3B8A2, A0A3B3B8B6
    Related
    ENSOMEP00005009838.1, ENSOMET00005011172.1
    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.