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gal3st1a galactose-3-O-sulfotransferase 1a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112148872, updated on 10-Jul-2024

Summary

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Gene symbol
gal3st1a
Gene description
galactose-3-O-sulfotransferase 1a
See related
EnsemblRapid:ENSOMEG00005028310
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
gal3st1
Orthologs
human zebrafish all
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Genomic context

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See gal3st1a in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
3
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (19147416..19152625)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096084.1 (14137462..14142701, complement)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 2 Neighboring gene pescadillo Neighboring gene leucine zipper like post translational regulator 1 Neighboring gene claudin 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myelination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylceramide sulfotransferase
Names
galactose-3-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    19147416..19152625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024276270.2 → XP_024132038.1  galactosylceramide sulfotransferase

    UniProtKB/TrEMBL
    A0A3B3B8Z2, A0A834CHZ5
    Related
    ENSOMEP00005054801.1, ENSOMET00005068315.1
    Conserved Domains (1) summary
    cl22970
    Location:1 → 408
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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