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LOC112148118 VIP36-like protein [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112148118, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112148118
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSOMEG00005000403
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC112148118 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (32502166..32508897)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096084.1 (1357010..1363737, complement)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene unc-5 netrin receptor Db Neighboring gene transcription termination factor 1 Neighboring gene TM2 domain containing 2 Neighboring gene endonuclease G Neighboring gene Golgi-associated plant pathogenesis-related protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    32502166..32508897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024274930.2 → XP_024130698.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3BAS2, A0A834CPG4
    Related
    ENSOMEP00005000798.1, ENSOMET00005000880.1
    Conserved Domains (1) summary
    cl14058
    Location:60 → 308
    lectin_L-type; legume lectins

  2. XM_024274931.2 → XP_024130699.1  VIP36-like protein isoform X2

    Related
    ENSOMEP00005000797.1, ENSOMET00005000879.1
    Conserved Domains (1) summary
    cl14058
    Location:22 → 217
    lectin_L-type; legume lectins
Nucleotide Protein Strain
Heading Accession and Version

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