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ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146665, updated on 10-Jul-2024

Summary

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Gene symbol
ppp2r3c
Gene description
protein phosphatase 2, regulatory subunit B'', gamma
See related
EnsemblRapid:ENSOMEG00005006576
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See ppp2r3c in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
13
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG22 NC_050533.1 (20189461..20194107)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096073.1 (20189459..20194107)

Linkage Group LG22 - NC_050533.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit alpha 6a Neighboring gene protein only RNase P catalytic subunit Neighboring gene family with sequence similarity 177 member A1 Neighboring gene tetratricopeptide repeat domain 7B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in B cell homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in T cell homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cortical cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of B cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma
Names
protein phosphatase 2 regulatory subunit B''gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050533.1 Reference ASM292280v2 Primary Assembly

    Range
    20189461..20194107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024272595.2 → XP_024128363.1  serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma

    UniProtKB/TrEMBL
    A0A3B3DFK7
    Related
    ENSOMEP00005013733.1, ENSOMET00005015369.1
    Conserved Domains (1) summary
    cd21505
    Location:58 → 439
    PPP2R3C; serine/threonine protein phosphatase 2A regulatory subunit B" subunit gamma
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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