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LOC112146500 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146500, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112146500
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
EnsemblRapid:ENSOMEG00005018341
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC112146500 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
2
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (12775595..12786531, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (10985310..10996188)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene fumarylacetoacetate hydrolase domain containing 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A0 Neighboring gene methionine-R-sulfoxide reductase B1-A-like Neighboring gene methionine-R-sulfoxide reductase B1-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    12775595..12786531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024272358.2 → XP_024128126.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A3B3BZT6
    Related
    ENSOMEP00005041116.1, ENSOMET00005046319.1
    Conserved Domains (1) summary
    pfam00685
    Location:125 → 361
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases