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hcfc1a host cell factor C1a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112145112, updated on 10-Jul-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
EnsemblRapid:ENSOMEG00005002994
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
hcfc1
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
28
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (163888..174163)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (29627708..29637976, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112145116 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene uncharacterized LOC118598730 Neighboring gene GATA binding protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    163888..174163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024270158.2 → XP_024125926.1  host cell factor 1a

    UniProtKB/TrEMBL
    A0A834C4N1
    Related
    ENSOMEP00005005745.1, ENSOMET00005006863.1
    Conserved Domains (5) summary
    cd00063
    Location:1611 → 1640
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:265 → 331
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    cl26061
    Location:13 → 276
    PLN02193; nitrile-specifier protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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