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mrps16 mitochondrial ribosomal protein S16 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112145102, updated on 10-Jul-2024

Summary

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Gene symbol
mrps16
Gene description
mitochondrial ribosomal protein S16
See related
EnsemblRapid:ENSOMEG00005024709
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See mrps16 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (28043572..28046871)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (10441054..10444338, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112145431 Neighboring gene parkinson protein 7 Neighboring gene paired box 7a Neighboring gene ERBB receptor feedback inhibitor 1a Neighboring gene taste receptor type 1 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
28S ribosomal protein S16, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    28043572..28046871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024270146.2 → XP_024125914.1  28S ribosomal protein S16, mitochondrial

    UniProtKB/TrEMBL
    A0A3B3CRF6, A0A834FQX4
    Related
    ENSOMEP00005050402.1, ENSOMET00005060662.1
    Conserved Domains (1) summary
    TIGR00002
    Location:17 → 99
    S16; ribosomal protein S16
Nucleotide Protein Strain
Heading Accession and Version

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