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eefsec eukaryotic elongation factor, selenocysteine-tRNA-specific [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112144976, updated on 10-Jul-2024

Summary

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Gene symbol
eefsec
Gene description
eukaryotic elongation factor, selenocysteine-tRNA-specific
See related
EnsemblRapid:ENSOMEG00005003731
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See eefsec in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (32684206..32698865, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (2091162..2105821, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene fibroleukin Neighboring gene GATA binding protein 2b Neighboring gene RuvB-like AAA ATPase 1 Neighboring gene musculoskeletal, embryonic nuclear protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    32684206..32698865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024269912.1 → XP_024125680.1  selenocysteine-specific elongation factor isoform X1

    UniProtKB/TrEMBL
    A0A834CPV7
    Related
    ENSOMEP00005006572.1, ENSOMET00005007708.1
    Conserved Domains (3) summary
    cd01889
    Location:14 → 206
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    cd03696
    Location:220 → 302
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:307 → 436
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

  2. XM_036212056.1 → XP_036067949.1  selenocysteine-specific elongation factor isoform X2

    UniProtKB/TrEMBL
    A0A834CPV7
    Related
    ENSOMEP00005006547.1, ENSOMET00005007683.1
    Conserved Domains (3) summary
    cd01889
    Location:14 → 206
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    cd03696
    Location:220 → 302
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:307 → 436
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

RNA

  1. XR_004947927.1 RNA Sequence

  2. XR_002919001.2 RNA Sequence

  3. XR_002919000.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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