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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112143568, updated on 10-Jul-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
EnsemblRapid:ENSOMEG00005018199
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
kirrel2
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
15
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG16 NC_050527.1 (11207784..11239118)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096078.1 (11210552..11241800)

Linkage Group LG16 - NC_050527.1Genomic Context describing neighboring genes Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene uncharacterized LOC112143575 Neighboring gene uncharacterized LOC118599817 Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene suppressor of tumorigenicity 14 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kirre like nephrin family adhesion molecule 3, like
Names
kirre like nephrin family adhesion molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050527.1 Reference ASM292280v2 Primary Assembly

    Range
    11207784..11239118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024267628.2 → XP_024123396.1  kirre like nephrin family adhesion molecule 3, like isoform X2

    UniProtKB/TrEMBL
    A0A3B3DUK1
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  2. XM_024267627.2 → XP_024123395.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    UniProtKB/TrEMBL
    A0A3B3DUK1, A0A834FSH0
    Related
    ENSOMEP00005041485.1, ENSOMET00005046693.1
    Conserved Domains (4) summary
    pfam13927
    Location:220 → 277
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  3. XM_024267629.2 → XP_024123397.1  kirre like nephrin family adhesion molecule 3, like isoform X3

    UniProtKB/TrEMBL
    A0A3B3DUK1
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain

  4. XM_024267631.2 → XP_024123399.1  kirre like nephrin family adhesion molecule 3, like isoform X5

    UniProtKB/TrEMBL
    A0A3B3DUK1
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain

  5. XM_024267630.2 → XP_024123398.1  kirre like nephrin family adhesion molecule 3, like isoform X4

    UniProtKB/TrEMBL
    A0A3B3CHH9, A0A3B3DUK1
    Related
    ENSOMEP00005041486.1, ENSOMET00005046694.1
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
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