U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

unm_hu7910 un-named hu7910 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112142277, updated on 10-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
unm_hu7910
Gene description
un-named hu7910
See related
EnsemblRapid:ENSOMEG00005002800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See unm_hu7910 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023416925.1 (21564..66789)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020104469.1 (21092..66789)

NW_023416925.1Genomic Context describing neighboring genes Neighboring gene Ig kappa-b4 chain C region-like Neighboring gene Ig kappa-b4 chain C region-like Neighboring gene uncharacterized LOC112142278 Neighboring gene uncharacterized LOC112142279

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase; calponin homology domain-containing protein DDB_G0272472; trichohyalin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023416925.1 Reference ASM292280v2 Primary Assembly

    Range
    21564..66789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024265532.2 → XP_024121300.1  calponin homology domain-containing protein DDB_G0272472 isoform X9

    Related
    ENSOMEP00005004692.1, ENSOMET00005005511.1
    Conserved Domains (3) summary
    pfam05279
    Location:30 → 305
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:280 → 597
    TPH; Trichohyalin-plectin-homology domain
    cl26011
    Location:583 → 671
    Pkinase; Protein kinase domain

  2. XM_036210950.1 → XP_036066843.1  calponin homology domain-containing protein DDB_G0272472 isoform X1

    Related
    ENSOMEP00005004676.1, ENSOMET00005005495.1
    Conserved Domains (3) summary
    PTZ00266
    Location:645 → 733
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam05279
    Location:92 → 367
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:342 → 659
    TPH; Trichohyalin-plectin-homology domain

  3. XM_024265526.2 → XP_024121294.1  trichohyalin isoform X2

    Conserved Domains (3) summary
    pfam05279
    Location:92 → 366
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:341 → 658
    TPH; Trichohyalin-plectin-homology domain
    cl26011
    Location:644 → 732
    Pkinase; Protein kinase domain

  4. XM_024265527.2 → XP_024121295.1  calponin homology domain-containing protein DDB_G0272472 isoform X3

    Related
    ENSOMEP00005004678.1, ENSOMET00005005497.1
    Conserved Domains (3) summary
    pfam05279
    Location:92 → 358
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:333 → 650
    TPH; Trichohyalin-plectin-homology domain
    cl26011
    Location:636 → 724
    Pkinase; Protein kinase domain

  5. XM_036210951.1 → XP_036066844.1  calponin homology domain-containing protein DDB_G0272472 isoform X5

    Conserved Domains (3) summary
    PTZ00266
    Location:623 → 711
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam05279
    Location:70 → 345
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:320 → 637
    TPH; Trichohyalin-plectin-homology domain

  6. XM_024265524.2 → XP_024121292.1  calponin homology domain-containing protein DDB_G0272472 isoform X1

    Related
    ENSOMEP00005004683.1, ENSOMET00005005502.1
    Conserved Domains (3) summary
    PTZ00266
    Location:645 → 733
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam05279
    Location:92 → 367
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:342 → 659
    TPH; Trichohyalin-plectin-homology domain

  7. XM_024265528.2 → XP_024121296.1  calponin homology domain-containing protein DDB_G0272472 isoform X4

    Related
    ENSOMEP00005004682.1, ENSOMET00005005501.1
    Conserved Domains (3) summary
    pfam05279
    Location:92 → 352
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:327 → 644
    TPH; Trichohyalin-plectin-homology domain
    cl26011
    Location:630 → 718
    Pkinase; Protein kinase domain

  8. XM_024265530.2 → XP_024121298.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    UniProtKB/TrEMBL
    A0A3B3BIW1
    Conserved Domains (4) summary
    pfam05279
    Location:86 → 360
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:339 → 499
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:414 → 440
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:583 → 736
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_024265529.2 → XP_024121297.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    UniProtKB/TrEMBL
    A0A3B3D5L6
    Related
    ENSOMEP00005005347.1, ENSOMET00005006460.1
    Conserved Domains (4) summary
    pfam05279
    Location:86 → 362
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:351 → 511
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:426 → 452
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:595 → 748
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  10. XM_024265533.2 → XP_024121301.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    UniProtKB/TrEMBL
    A0A3B3D5L6
    Related
    ENSOMEP00005005346.1, ENSOMET00005006459.1
    Conserved Domains (4) summary
    pfam05279
    Location:86 → 336
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:315 → 475
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:390 → 416
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:559 → 712
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  11. XM_024265531.2 → XP_024121299.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    UniProtKB/TrEMBL
    A0A3B3D6Q1
    Conserved Domains (4) summary
    pfam05279
    Location:86 → 347
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:336 → 496
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:411 → 437
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:580 → 733
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  12. XM_024265534.2 → XP_024121302.1  calponin homology domain-containing protein DDB_G0272472 isoform X11

    Conserved Domains (3) summary
    pfam05279
    Location:2 → 266
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    pfam13868
    Location:241 → 558
    TPH; Trichohyalin-plectin-homology domain
    cl26011
    Location:544 → 632
    Pkinase; Protein kinase domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases