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LOC112141897 GTP-binding protein Rheb [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112141897, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112141897
Gene description
GTP-binding protein Rheb
See related
EnsemblRapid:ENSOMEG00005025471
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC112141897 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (1745886..1754445, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020103670.1 (192039..200598)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene activin receptor type-2B Neighboring gene gamma-crystallin N-A Neighboring gene lymphocyte antigen 97, tandem duplicate 3 Neighboring gene protein tyrosine phosphatase receptor type Ma Neighboring gene uncharacterized LOC118599939 Neighboring gene uncharacterized LOC118599967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GTP-binding protein Rheb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    1745886..1754445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024265100.1 → XP_024120868.1  GTP-binding protein Rheb

    UniProtKB/TrEMBL
    A0A3B3C3B1
    Related
    ENSOMEP00005051360.1, ENSOMET00005062199.1
    Conserved Domains (1) summary
    cd04137
    Location:6 → 174
    RheB; Ras Homolog Enriched in Brain (RheB) is a small GTPase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases