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LOC112140917 gastrula zinc finger protein XlCGF57.1-like [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112140917, updated on 14-Dec-2023

Summary

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Gene symbol
LOC112140917
Gene description
gastrula zinc finger protein XlCGF57.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC112140917 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023416905.1 (86324..106632)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020101876.1 (86325..107312)

NW_023416905.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene natterin-4-like Neighboring gene protein NLRC3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023416905.1 Reference ASM292280v2 Primary Assembly

    Range
    86324..106632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024263939.2 → XP_024119707.1  gastrula zinc finger protein XlCGF57.1-like

    Conserved Domains (2) summary
    COG5048
    Location:44 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:346 → 366
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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