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macf1b microtubule actin crosslinking factor 1b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112140489, updated on 13-Jul-2024

Summary

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Gene symbol
macf1b
Gene description
microtubule actin crosslinking factor 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
plec
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Genomic context

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See macf1b in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
75
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG16 NC_050527.1 (31412554..31515991, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020101034.1 (136365..168698)

Linkage Group LG16 - NC_050527.1Genomic Context describing neighboring genes Neighboring gene nuclear factor of activated T-cells, cytoplasmic 1 Neighboring gene riboflavin transporter 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050527.1 Reference ASM292280v2 Primary Assembly

    Range
    31412554..31515991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036215925.1 → XP_036071818.1  plectin

    Conserved Domains (12) summary
    PTZ00121
    Location:2819 → 3678
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4459 → 4490
    PLEC; Plectin repeat
    PRK03918
    Location:2114 → 2605
    PRK03918; DNA double-strand break repair ATPase Rad50
    cd00176
    Location:7158 → 7369
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:5068 → 5107
    Plectin; Plectin repeat
    pfam02187
    Location:7613 → 7681
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam13499
    Location:7534 → 7597
    EF-hand_7; EF-hand domain pair
    pfam17902
    Location:1834 → 1900
    SH3_10; SH3 domain
    pfam18373
    Location:1935 → 2012
    Spectrin_like; Spectrin like domain
    cd21188
    Location:1078 → 1187
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:1200 → 1305
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version

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