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large2 LARGE xylosyl- and glucuronyltransferase 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112140075, updated on 10-Jul-2024

Summary

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Gene symbol
large2
Gene description
LARGE xylosyl- and glucuronyltransferase 2
See related
EnsemblRapid:ENSOMEG00005000640
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See large2 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
17
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG3 NC_050514.1 (3442798..3534385, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020100284.1 (142593..234151, complement)

Linkage Group LG3 - NC_050514.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 1b Neighboring gene uncharacterized LOC118600075 Neighboring gene potassium voltage-gated channel, KQT-like subfamily, member 1.1 Neighboring gene uncharacterized LOC112140079 Neighboring gene uncharacterized LOC118599995

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LARGE xylosyl- and glucuronyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050514.1 Reference ASM292280v2 Primary Assembly

    Range
    3442798..3534385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024262983.2 → XP_024118751.1  LARGE xylosyl- and glucuronyltransferase 2

    UniProtKB/TrEMBL
    A0A3B3CN52, A0A834CV34
    Related
    ENSOMEP00005004240.1, ENSOMET00005004940.1
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:465 → 734
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. XM_024262986.2 → XP_024118754.1  LARGE xylosyl- and glucuronyltransferase 2

    UniProtKB/TrEMBL
    A0A3B3CN52, A0A834CV34
    Related
    ENSOMEP00005004219.1, ENSOMET00005004919.1
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:465 → 734
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  3. XM_024262985.2 → XP_024118753.1  LARGE xylosyl- and glucuronyltransferase 2

    UniProtKB/TrEMBL
    A0A3B3CN52, A0A834CV34
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:465 → 734
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  4. XM_036216782.1 → XP_036072675.1  LARGE xylosyl- and glucuronyltransferase 2

    UniProtKB/TrEMBL
    A0A3B3CN52, A0A834CV34
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:465 → 734
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
Nucleotide Protein Strain
Heading Accession and Version

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