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mcm10 minichromosome maintenance 10 replication initiation factor [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112139794, updated on 10-Jul-2024

Summary

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Gene symbol
mcm10
Gene description
minichromosome maintenance 10 replication initiation factor
See related
EnsemblRapid:ENSOMEG00005001293
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See mcm10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023416915.1 (40087..55624, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020099850.1 (40087..55604, complement)

NW_023416915.1Genomic Context describing neighboring genes Neighboring gene upper zone of growth plate and cartilage matrix associated a Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC112139785 Neighboring gene girdin Neighboring gene methionine sulfoxide reductase B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA replication origin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of replication fork protection complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein MCM10 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023416915.1 Reference ASM292280v2 Primary Assembly

    Range
    40087..55624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024262627.2 → XP_024118395.1  protein MCM10 homolog

    UniProtKB/TrEMBL
    A0A3B3DID6, A0A834FI52
    Conserved Domains (4) summary
    PHA03369
    Location:157 → 299
    PHA03369; capsid maturational protease; Provisional
    pfam09329
    Location:465 → 510
    zf-primase; Primase zinc finger
    pfam09332
    Location:605 → 945
    Mcm10; Mcm10 replication factor
    cl27511
    Location:15 → 196
    Na_Ca_ex; Sodium/calcium exchanger protein

  2. XM_024262626.2 → XP_024118394.1  protein MCM10 homolog

    UniProtKB/TrEMBL
    A0A3B3DID6, A0A834FI52
    Related
    ENSOMEP00005002446.1, ENSOMET00005002678.1
    Conserved Domains (4) summary
    PHA03369
    Location:157 → 299
    PHA03369; capsid maturational protease; Provisional
    pfam09329
    Location:465 → 510
    zf-primase; Primase zinc finger
    pfam09332
    Location:605 → 945
    Mcm10; Mcm10 replication factor
    cl27511
    Location:15 → 196
    Na_Ca_ex; Sodium/calcium exchanger protein
Nucleotide Protein Strain
Heading Accession and Version

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