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tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112139185, updated on 10-Jul-2024

Summary

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Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
EnsemblRapid:ENSOMEG00005015609
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See tmtc3 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
17
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG6 NC_050517.1 (5118699..5159846)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020098550.1 (125837..166984)

Linkage Group LG6 - NC_050517.1Genomic Context describing neighboring genes Neighboring gene CD44 antigen Neighboring gene uncharacterized LOC118598823 Neighboring gene centrosomal protein 290 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene uncharacterized LOC118598824 Neighboring gene kit ligand a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050517.1 Reference ASM292280v2 Primary Assembly

    Range
    5118699..5159846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024261893.1 → XP_024117661.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BN17, A0A3B3D914
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 803
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_036212205.1 → XP_036068098.1  protein O-mannosyl-transferase TMTC3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3D914
    Related
    ENSOMEP00005035344.1, ENSOMET00005039325.1
    Conserved Domains (3) summary
    TIGR02917
    Location:371 → 731
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:458 → 485
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:187 → 259
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_024261899.2 → XP_024117667.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BN17, A0A3B3D914
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 803
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_024261894.2 → XP_024117662.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BN17, A0A3B3D914
    Related
    ENSOMEP00005035346.1, ENSOMET00005039327.1
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 803
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_024261898.2 → XP_024117666.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BN17, A0A3B3D914
    Related
    ENSOMEP00005035345.1, ENSOMET00005039326.1
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 803
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  6. XM_024261897.2 → XP_024117665.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BN17, A0A3B3D914
    Related
    ENSOMEP00005035343.1, ENSOMET00005039324.1
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 803
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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