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LOC112138198 GTP-binding protein 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112138198, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112138198
Gene description
GTP-binding protein 1
See related
EnsemblRapid:ENSOMEG00005000099
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC112138198 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023417065.1 (48631..58385)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096342.1 (48684..58385)

NW_023417065.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor CD22-like Neighboring gene GTPase IMAP family member 8-like Neighboring gene small G protein signaling modulator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GTP-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023417065.1 Reference ASM292280v2 Primary Assembly

    Range
    48631..58385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024260766.2 → XP_024116534.1  GTP-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3DHB5
    Conserved Domains (2) summary
    cd04165
    Location:75 → 299
    GTPBP1_like; GTP binding protein 1 (GTPBP1)-like family includes GTPBP2
    cl27768
    Location:15 → 487
    SelB; Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

  2. XM_024260764.2 → XP_024116532.1  GTP-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A834FI31
    Related
    ENSOMEP00005000094.1, ENSOMET00005000143.1
    Conserved Domains (2) summary
    cd04165
    Location:163 → 387
    GTPBP1_like; GTP binding protein 1 (GTPBP1)-like family includes GTPBP2
    cl27768
    Location:54 → 575
    SelB; Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

  3. XM_024260765.1 → XP_024116533.1  GTP-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3C1Q8, A0A834FI31
    Related
    ENSOMEP00005000095.1, ENSOMET00005000144.1
    Conserved Domains (2) summary
    cd04165
    Location:163 → 387
    GTPBP1_like; GTP binding protein 1 (GTPBP1)-like family includes GTPBP2
    cl27768
    Location:54 → 575
    SelB; Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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