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thoc3 THO complex 3 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112137824, updated on 10-Jul-2024

Summary

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Gene symbol
thoc3
Gene description
THO complex 3
See related
EnsemblRapid:ENSOMEG00005011142
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See thoc3 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (27918404..27920933, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096110.1 (1475225..1477395)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene NLR family CARD domain-containing protein 3 Neighboring gene uncharacterized LOC112137827 Neighboring gene complexin-2 Neighboring gene shootin 3 Neighboring gene ganglioside GM2 activator Neighboring gene protocadherin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    27918404..27920933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024260331.2 → XP_024116099.1  THO complex subunit 3

    UniProtKB/TrEMBL
    A0A3B3DY12
    Related
    ENSOMEP00005024903.1, ENSOMET00005027580.1
    Conserved Domains (2) summary
    cd00200
    Location:12 → 261
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:30 → 68
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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