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LOC112079123 transmembrane and TPR repeat-containing protein 2-like [ Salvelinus sp. IW2-2015 ]

Gene ID: 112079123, updated on 13-Aug-2024

Summary

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Gene symbol
LOC112079123
Gene description
transmembrane and TPR repeat-containing protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC112079123 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM291031v2 (GCF_002910315.2) Unplaced Scaffold NW_019948226.1 (8526..9968)

NW_019948226.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019948226 Unplaced Scaffold Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NW_019948226.1 Reference ASM291031v2 Primary Assembly

    Range
    8526..9968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024145157.1 → XP_024000925.1  transmembrane and TPR repeat-containing protein 2-like

    Conserved Domains (4) summary
    sd00006
    Location:273 → 302
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:273 → 300
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:3 → 75
    DUF1736; Domain of unknown function (DUF1736)
    cl28296
    Location:231 → 310
    NrfG; Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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