U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112068181 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like [ Salvelinus sp. IW2-2015 ]

Gene ID: 112068181, updated on 13-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC112068181
Gene description
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112068181 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM291031v2 (GCF_002910315.2) Unplaced Scaffold NW_019942525.1 (153881..231182, complement)

NW_019942525.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112068179 Neighboring gene peptidyl-prolyl cis-trans isomerase-like 4 Neighboring gene ribonuclease ZC3H12A-like Neighboring gene cyclin-dependent kinase 19-like Neighboring gene S-adenosylmethionine decarboxylase proenzyme-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019942525 Unplaced Scaffold Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NW_019942525.1 Reference ASM291031v2 Primary Assembly

    Range
    153881..231182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024135252.1 → XP_023991020.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X4

    Conserved Domains (3) summary
    smart00547
    Location:743 → 766
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:744 → 763
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  2. XM_024135250.1 → XP_023991018.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X2

    Conserved Domains (3) summary
    smart00547
    Location:777 → 800
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:778 → 797
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  3. XM_024135251.1 → XP_023991019.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X3

    Conserved Domains (3) summary
    smart00547
    Location:748 → 771
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:749 → 768
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  4. XM_024135249.1 → XP_023991017.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1

    Conserved Domains (3) summary
    smart00547
    Location:782 → 805
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:783 → 802
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases