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LOC111985053 probable beta-1,4-xylosyltransferase IRX10 [ Quercus suber ]

Gene ID: 111985053, updated on 18-Jul-2024

Summary

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Gene symbol
LOC111985053
Gene description
probable beta-1,4-xylosyltransferase IRX10
Locus tag
CFP56_000572
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus suber
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Also known as
IRX10
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Genomic context

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See LOC111985053 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current Cork oak 2.0 (GCF_002906115.3) Unplaced Scaffold NW_027070417.1 (105176..110087)
100 previous assembly CorkOak1.0 (GCF_002906115.1) Unplaced Scaffold NW_019816395.1 (687329..692216, complement)

NW_027070417.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136061138 Neighboring gene cell division control protein 2 homolog A-like Neighboring gene uncharacterized LOC111985018 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10
Names
4-xylosyltransferase irx10
putative beta-1,4-xylosyltransferase irx10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002906115.3-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cork oak 2.0

Genomic

  1. NW_027070417.1 Reference Cork oak 2.0

    Range
    105176..110087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024016679.2 → XP_023872447.1  probable beta-1,4-xylosyltransferase IRX10

    Conserved Domains (1) summary
    pfam03016
    Location:43 → 341
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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