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LOC111978084 uncharacterized LOC111978084 [ Salvelinus sp. IW2-2015 ]

Gene ID: 111978084, updated on 13-Aug-2024

Summary

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Gene symbol
LOC111978084
Gene description
uncharacterized LOC111978084
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC111978084 in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG18 NC_036858.1 (54498515..54515748, complement)

Linkage Group LG18 - NC_036858.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase alpha-2 Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene membrane-spanning 4-domains subfamily A member 15-like Neighboring gene nucleolar RNA helicase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036858.1 Chromosome LG18 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC111978084

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036858.1 Reference ASM291031v2 Primary Assembly

    Range
    54498515..54515748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024007882.1 → XP_023863650.1  uncharacterized protein LOC111978084

    Conserved Domains (3) summary
    COG1215
    Location:682 → 1015
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    cl11394
    Location:498 → 839
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25732
    Location:1155 → 1317
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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