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galnt6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [ Salvelinus sp. IW2-2015 ]

Gene ID: 111976948, updated on 13-Aug-2024

Summary

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Gene symbol
galnt6
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
zebrafish all
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Genomic context

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See galnt6 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG17 NC_036857.1 (29837752..29857712, complement)

Linkage Group LG17 - NC_036857.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10 Neighboring gene ceramide kinase Neighboring gene adenylate cyclase type 6 Neighboring gene voltage-dependent L-type calcium channel subunit beta-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036857.1 Chromosome LG17 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036857.1 Reference ASM291031v2 Primary Assembly

    Range
    29837752..29857712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024006138.1 → XP_023861906.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:498 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_024006139.1 → XP_023861907.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:498 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_024006140.1 → XP_023861908.1  polypeptide N-acetylgalactosaminyltransferase 6

    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:498 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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