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LOC111975742 torsin-1A-interacting protein 2 [ Salvelinus sp. IW2-2015 ]

Gene ID: 111975742, updated on 13-Aug-2024

Summary

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Gene symbol
LOC111975742
Gene description
torsin-1A-interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC111975742 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
1
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG16 NC_036856.1 (41861371..41862649)

Linkage Group LG16 - NC_036856.1Genomic Context describing neighboring genes Neighboring gene torsin-1A-interacting protein 2 Neighboring gene uncharacterized LOC111975743 Neighboring gene olfactomedin-like protein 2B Neighboring gene cyclic AMP-dependent transcription factor ATF-6 alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036856.1 Chromosome LG16 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036856.1 Reference ASM291031v2 Primary Assembly

    Range
    41861371..41862649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024004297.1 → XP_023860065.1  torsin-1A-interacting protein 2

    Conserved Domains (2) summary
    pfam05609
    Location:324 → 538
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    cl01342
    Location:24 → 118
    Peptidase_A22B; Signal peptide peptidase
Nucleotide Protein
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