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lman2la lectin, mannose-binding 2-like a [ Salvelinus sp. IW2-2015 ]

Gene ID: 111964012, updated on 13-Aug-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Also known as
lman2l
Orthologs
zebrafish all
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Genomic context

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See lman2la in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG5 NC_036844.1 (18191083..18195386, complement)

Linkage Group LG5 - NC_036844.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene WW domain-binding protein 1 Neighboring gene mitochondrial fission process protein 1-like Neighboring gene mediator of RNA polymerase II transcription subunit 13-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036844.1 Chromosome LG5 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein
Names
lectin, mannose binding 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036844.1 Reference ASM291031v2 Primary Assembly

    Range
    18191083..18195386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023987657.1 → XP_023843425.1  VIP36-like protein isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:31 → 279
    lectin_L-type; legume lectins

  2. XM_023987658.1 → XP_023843426.1  VIP36-like protein isoform X3

    Conserved Domains (1) summary
    cl14058
    Location:31 → 290
    lectin_L-type; legume lectins

  3. XM_023987656.1 → XP_023843424.1  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:31 → 290
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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