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LOC111958770 plectin-like [ Salvelinus sp. IW2-2015 ]

Gene ID: 111958770, updated on 13-Aug-2024

Summary

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Gene symbol
LOC111958770
Gene description
plectin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC111958770 in Genome Data Viewer
Location:
chromosome: LG35
Exon count:
30
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG35 NC_036874.1 (18332915..18367808, complement)

Linkage Group LG35 - NC_036874.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111958771 Neighboring gene nuclear factor 7, brain Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene R-spondin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036874.1 Chromosome LG35 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036874.1 Reference ASM291031v2 Primary Assembly

    Range
    18332915..18367808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024134897.1 → XP_023990665.1  LOW QUALITY PROTEIN: plectin-like

    Conserved Domains (6) summary
    smart00250
    Location:2676 → 2710
    PLEC; Plectin repeat
    COG5069
    Location:1 → 165
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:523 → 712
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3949 → 3988
    Plectin; Plectin repeat
    cl25732
    Location:926 → 1549
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1293 → 1985
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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