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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Salvelinus sp. IW2-2015 ]

Gene ID: 111958622, updated on 13-Aug-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: LG35
Exon count:
16
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG35 NC_036874.1 (2542901..2591509, complement)

Linkage Group LG35 - NC_036874.1Genomic Context describing neighboring genes Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene uncharacterized LOC111958711 Neighboring gene NPHS1 adhesion molecule, nephrin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036874.1 Chromosome LG35 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: kin of IRRE-like protein 1
Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036874.1 Reference ASM291031v2 Primary Assembly

    Range
    2542901..2591509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023979885.2 → XP_023835653.1  LOW QUALITY PROTEIN: kin of IRRE-like protein 1

    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 302
    Ig_2; Immunoglobulin domain
    cd05758
    Location:428 → 525
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl28434
    Location:19 → 113
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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