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LOC111957889 VIP36-like protein [ Salvelinus sp. IW2-2015 ]

Gene ID: 111957889, updated on 13-Aug-2024

Summary

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Gene symbol
LOC111957889
Gene description
VIP36-like protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC111957889 in Genome Data Viewer
Location:
chromosome: LG33
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG33 NC_036872.1 (29775114..29782454)

Linkage Group LG33 - NC_036872.1Genomic Context describing neighboring genes Neighboring gene TM2 domain containing 2 Neighboring gene T-box transcription factor TBX2-A-like Neighboring gene leukocyte surface antigen CD53 Neighboring gene serine/threonine-protein kinase A-Raf

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036872.1 Chromosome LG33 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036872.1 Reference ASM291031v2 Primary Assembly

    Range
    29775114..29782454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023978963.1 → XP_023834731.1  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:56 → 311
    lectin_L-type; legume lectins

  2. XM_023978964.1 → XP_023834732.1  VIP36-like protein isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:56 → 303
    lectin_L-type; legume lectins
Nucleotide Protein
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