U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

capn3b calpain 3b [ Salvelinus sp. IW2-2015 ]

Gene ID: 111954339, updated on 13-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
capn3b
Gene description
calpain 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Also known as
capn3
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See capn3b in Genome Data Viewer
Location:
chromosome: LG28
Exon count:
23
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG28 NC_036868.1 (3429335..3464990, complement)

Linkage Group LG28 - NC_036868.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 106b Neighboring gene 5.8S ribosomal RNA Neighboring gene TOM1-like protein 2 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene macoilin Neighboring gene nuclear receptor binding protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_036868.1 Chromosome LG28 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-3
Names
calpain 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036868.1 Reference ASM291031v2 Primary Assembly

    Range
    3429335..3464990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023974000.1 → XP_023829768.1  calpain-3

    Conserved Domains (5) summary
    pfam00648
    Location:70 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 535
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:539 → 607
    Calpain_u2; Unstructured region on Calpain-3
    cd15897
    Location:609 → 636
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:609 → 776
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.