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chst6 carbohydrate sulfotransferase 6 [ Salvelinus sp. IW2-2015 ]

Gene ID: 111952911, updated on 13-Aug-2024

Summary

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Gene symbol
chst6
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
zebrafish all
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Genomic context

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See chst6 in Genome Data Viewer
Location:
chromosome: LG26
Exon count:
2
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG26 NC_036866.1 (17437017..17453281)

Linkage Group LG26 - NC_036866.1Genomic Context describing neighboring genes Neighboring gene GABA(A) receptor-associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene spire-type actin nucleation factor 2 Neighboring gene syntrophin, beta 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036866.1 Chromosome LG26 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036866.1 Reference ASM291031v2 Primary Assembly

    Range
    17437017..17453281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023971920.1 → XP_023827688.1  carbohydrate sulfotransferase 6-like

    Conserved Domains (1) summary
    pfam13469
    Location:45 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_023971919.1 → XP_023827687.1  carbohydrate sulfotransferase 6-like

    Conserved Domains (1) summary
    pfam13469
    Location:45 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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Gene LinkOut

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