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kptn kaptin (actin binding protein) [ Salvelinus sp. IW2-2015 ]

Gene ID: 111950462, updated on 13-Aug-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG23 NC_036863.1 (12551725..12563619)

Linkage Group LG23 - NC_036863.1Genomic Context describing neighboring genes Neighboring gene histone H3.3 Neighboring gene homeobox protein otx5-like Neighboring gene RNA-binding protein Nova-1-like Neighboring gene calpain small subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036863.1 Chromosome LG23 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036863.1 Reference ASM291031v2 Primary Assembly

    Range
    12551725..12563619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023968064.1 → XP_023823832.1  KICSTOR complex protein kaptin isoform X2

  2. XM_023968063.1 → XP_023823831.1  KICSTOR complex protein kaptin isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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