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ccdc113 coiled-coil domain containing 113 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 111947551, updated on 9-Nov-2023

Summary

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Gene symbol
ccdc113
Gene description
coiled-coil domain containing 113
See related
EnsemblRapid:ENSORLG00000035587
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See ccdc113 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (30387581..30391196)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105354282 Neighboring gene thromboxane A synthase 1 (platelet) Neighboring gene poly (ADP-ribose) polymerase family, member 12a Neighboring gene SLIT-ROBO Rho GTPase activating protein 1a Neighboring gene ribitol xylosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_019864.2 Chromosome 6 Reference ASM223467v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    30387581..30391196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023956108.1 → XP_023811876.1  coiled-coil domain-containing protein 113

    UniProtKB/TrEMBL
    A0A3P9KKN1
    Related
    ENSORLP00000061107.1, ENSORLT00000103818.1
    Conserved Domains (1) summary
    cl25732
    Location:70 → 317
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_023956109.1 → XP_023811877.1  coiled-coil domain-containing protein 113

    UniProtKB/TrEMBL
    A0A3P9KKN1
    Conserved Domains (1) summary
    cl25732
    Location:70 → 317
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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