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SMPD2 sphingomyelin phosphodiesterase 2 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111939751, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
See related
Ensembl:ENSCCEG00000012426
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
11
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 26 Unlocalized Scaffold NW_019776543.1 (356731..360614)

NW_019776543.1Genomic Context describing neighboring genes Neighboring gene TUB like protein 1 Neighboring gene TEA domain transcription factor 3 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene protein MRVI1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776543 Chromosome 26 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776543.1 Reference cyaCae2

    Range
    356731..360614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023942129.1 → XP_023797897.1  sphingomyelin phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A8C0UTU7
    Related
    ENSCCEP00000012925.1, ENSCCET00000020117.1
    Conserved Domains (1) summary
    cl00490
    Location:14 → 279
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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