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KIRREL1 kirre like nephrin family adhesion molecule 1 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111939502, updated on 3-Aug-2024

Summary

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Gene symbol
KIRREL1
Gene description
kirre like nephrin family adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See KIRREL1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 25 Unlocalized Scaffold NW_019776538.1 (62348..82456, complement)

NW_019776538.1Genomic Context describing neighboring genes Neighboring gene ETS translocation variant 3-like Neighboring gene CD84 molecule Neighboring gene uncharacterized LOC111939578 Neighboring gene SLAM family member 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776538 Chromosome 25 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776538.1 Reference cyaCae2

    Range
    62348..82456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023941776.1 → XP_023797544.1  kin of IRRE-like protein 1

    Conserved Domains (2) summary
    cd05898
    Location:153 → 250
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:70 → 135
    Ig_3; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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