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SDCBP2 syndecan binding protein 2 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111938125, updated on 3-Aug-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSCCEG00000021660
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 20 Unlocalized Scaffold NW_019776521.1 (5760362..5765369)

NW_019776521.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein phosphatase non-receptor type substrate 1-like Neighboring gene NSFL1 cofactor Neighboring gene FKBP prolyl isomerase 1A Neighboring gene syntaphilin Neighboring gene RAD21 cohesin complex component like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776521 Chromosome 20 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776521.1 Reference cyaCae2

    Range
    5760362..5765369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023939733.1 → XP_023795501.1  syntenin-2

    UniProtKB/TrEMBL
    A0A8C0VI10
    Related
    ENSCCEP00000024347.1, ENSCCET00000036597.1
    Conserved Domains (1) summary
    cd00992
    Location:110 → 189
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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