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CAPN3 calpain 3 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111930233, updated on 3-Aug-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
See related
Ensembl:ENSCCEG00000004340
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
26
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 5 Unlocalized Scaffold NW_019776404.1 (8513574..8542417)

NW_019776404.1Genomic Context describing neighboring genes Neighboring gene VPS39 subunit of HOPS complex Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776404 Chromosome 5 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776404.1 Reference cyaCae2

    Range
    8513574..8542417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023928196.1 → XP_023783964.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0UEA3
    Related
    ENSCCEP00000006170.1, ENSCCET00000010031.1
    Conserved Domains (4) summary
    pfam00648
    Location:69 → 408
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:429 → 572
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:576 → 641
    Calpain_u2; Unstructured region on Calpain-3
    cd16190
    Location:641 → 809
    EFh_PEF_CAPN3; Calcium-activated neutral

  2. XM_023928197.1 → XP_023783965.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0UEA3
    Related
    ENSCCEP00000006292.1, ENSCCET00000010262.1
    Conserved Domains (3) summary
    pfam00648
    Location:69 → 408
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:429 → 572
    Calpain_III; Calpain large subunit, domain III
    cd16190
    Location:602 → 770
    EFh_PEF_CAPN3; Calcium-activated neutral

  3. XM_023928198.1 → XP_023783966.1  calpain-3 isoform X3

    Conserved Domains (4) summary
    pfam01067
    Location:117 → 260
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:264 → 329
    Calpain_u2; Unstructured region on Calpain-3
    cd16190
    Location:329 → 497
    EFh_PEF_CAPN3; Calcium-activated neutral
    cl00051
    Location:4 → 96
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Nucleotide Protein
Heading Accession and Version

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