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LOC111917721 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111917721, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111917721
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Locus tag
LSAT_V11C400166380
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111917721 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 4 NC_056626.2 (39765819..39769385)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 4 NC_056626.1 (35349876..35353442, complement)

Chromosome 4 - NC_056626.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128133409 Neighboring gene small nucleolar RNA R71 Neighboring gene coniferyl alcohol acyltransferase Neighboring gene pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056626.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    39765819..39769385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023913386.2 → XP_023769154.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    UniProtKB/TrEMBL
    A0A9R1XNF8

  2. XM_023913385.3 → XP_023769153.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    UniProtKB/TrEMBL
    A0A9R1XNF8

  3. XM_023913387.3 → XP_023769155.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    UniProtKB/TrEMBL
    A0A9R1XNF8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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