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LOC111916226 inositol phosphorylceramide glucuronosyltransferase 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111916226, updated on 23-Nov-2023

Summary

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Gene symbol
LOC111916226
Gene description
inositol phosphorylceramide glucuronosyltransferase 1
Locus tag
LSAT_V11C200089740
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111916226 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 2 NC_056624.2 (201701879..201704324, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 2 NC_056624.1 (184694258..184696703, complement)

Chromosome 2 - NC_056624.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111916447 Neighboring gene phosphoenolpyruvate carboxylase kinase 2 Neighboring gene pentatricopeptide repeat-containing protein At1g62260, mitochondrial Neighboring gene protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: inositol phosphorylceramide glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056624.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    201701879..201704324 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042899884.1 → XP_042755818.1  LOW QUALITY PROTEIN: inositol phosphorylceramide glucuronosyltransferase 1

    UniProtKB/TrEMBL
    A0A9R1XRB2
    Conserved Domains (1) summary
    cd02537
    Location:59 → 298
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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