U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111916035 sucrose synthase 6 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111916035, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC111916035
Gene description
sucrose synthase 6
Locus tag
LSAT_V11C200076070
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111916035 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 2 NC_056624.2 (160410934..160415752, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 2 NC_056624.1 (145565171..145569969, complement)

Chromosome 2 - NC_056624.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122196626 Neighboring gene beta-1,3-galactosyltransferase pvg3 Neighboring gene protein SET DOMAIN GROUP 40 Neighboring gene phytoene synthase 2, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056624.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    160410934..160415752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023911679.3 → XP_023767447.1  sucrose synthase 6

    UniProtKB/TrEMBL
    A0A9R1W9X5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases