U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111915603 arabinosyltransferase XEG113 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111915603, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC111915603
Gene description
arabinosyltransferase XEG113
Locus tag
LSAT_V11C300109200
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111915603 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 3 NC_056625.2 (29933559..29937744)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 3 NC_056625.1 (28643347..28647523)

Chromosome 3 - NC_056625.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC128132733 Neighboring gene uncharacterized LOC111915652 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arabinosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall pectin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
arabinosyltransferase XEG113

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056625.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    29933559..29937744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023911249.3 → XP_023767017.1  arabinosyltransferase XEG113

    UniProtKB/TrEMBL
    A0A9R1W8N0
    Conserved Domains (2) summary
    pfam03407
    Location:145 → 371
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    pfam10250
    Location:417 → 446
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases