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LOC111914458 callose synthase 12 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111914458, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111914458
Gene description
callose synthase 12
Locus tag
LSAT_V11C300116750
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111914458 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 3 NC_056625.2 (51509987..51515930, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 3 NC_056625.1 (48434847..48440786, complement)

Chromosome 3 - NC_056625.2Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P2 Neighboring gene uncharacterized LOC128125929 Neighboring gene small nucleolar RNA J33 Neighboring gene riboflavin synthase Neighboring gene uncharacterized LOC111914460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056625.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    51509987..51515930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023910198.3 → XP_023765966.1  callose synthase 12

    UniProtKB/TrEMBL
    A0A9R1W1Q0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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