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LOC111911908 cellulose synthase A catalytic subunit 1 [UDP-forming] [ Lactuca sativa (garden lettuce) ]

Gene ID: 111911908, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111911908
Gene description
cellulose synthase A catalytic subunit 1 [UDP-forming]
Locus tag
LSAT_V11C100017650
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111911908 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 1 NC_056623.2 (51926026..51931262)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 1 NC_056623.1 (48333862..48339148)

Chromosome 1 - NC_056623.2Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 2 Neighboring gene uncharacterized LOC111911895 Neighboring gene EG45-like domain containing protein 2 Neighboring gene uncharacterized LOC128127217 Neighboring gene putative pentatricopeptide repeat-containing protein At3g49142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056623.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    51926026..51931262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023907659.2 → XP_023763427.1  cellulose synthase A catalytic subunit 1 [UDP-forming]

    UniProtKB/TrEMBL
    A0A9R1VMB6, A0A9R1WKX9
Nucleotide Protein
Heading Accession and Version

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