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LOC111908663 xyloglucan 6-xylosyltransferase 2 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111908663, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111908663
Gene description
xyloglucan 6-xylosyltransferase 2
Locus tag
LSAT_V11C500247870
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111908663 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 5 NC_056627.2 (139022451..139024398)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 5 NC_056627.1 (122188821..122190769, complement)

Chromosome 5 - NC_056627.2Genomic Context describing neighboring genes Neighboring gene receptor-like protein 4 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene probable histone-arginine methyltransferase 1.3 Neighboring gene isoleucine--tRNA ligase, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056627.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    139022451..139024398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023904475.3 → XP_023760243.1  xyloglucan 6-xylosyltransferase 2

    UniProtKB/TrEMBL
    A0A9R1VF01
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases