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LOC111895340 UDP-arabinopyranose mutase 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111895340, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111895340
Gene description
UDP-arabinopyranose mutase 1
Locus tag
LSAT_V11C400189410
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111895340 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 4 NC_056626.2 (138991649..138993322, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 4 NC_056626.1 (129772916..129774571, complement)

Chromosome 4 - NC_056626.2Genomic Context describing neighboring genes Neighboring gene gamma carbonic anhydrase-like 2, mitochondrial Neighboring gene squamosa promoter-binding-like protein 13A Neighboring gene SUMO-activating enzyme subunit 1B-1 Neighboring gene uncharacterized LOC111895365 Neighboring gene uncharacterized LOC128133283

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056626.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    138991649..138993322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023891419.3 → XP_023747187.1  UDP-arabinopyranose mutase 1

    UniProtKB/TrEMBL
    A0A9R1VXB6
Nucleotide Protein
Heading Accession and Version

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