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LOC111895166 hydroxyproline O-arabinosyltransferase 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111895166, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111895166
Gene description
hydroxyproline O-arabinosyltransferase 1
Locus tag
LSAT_V11C600306480
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111895166 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 6 NC_056628.2 (28228739..28231229)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 6 NC_056628.1 (26578863..26581354)

Chromosome 6 - NC_056628.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene homeobox protein knotted-1-like 2 Neighboring gene small nucleolar RNA R71 Neighboring gene flotillin-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056628.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    28228739..28231229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023891265.3 → XP_023747033.1  hydroxyproline O-arabinosyltransferase 1

    UniProtKB/TrEMBL
    A0A9R1V8G5
Nucleotide Protein
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