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LOC111894555 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111894555, updated on 23-Nov-2023

Summary

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Gene symbol
LOC111894555
Gene description
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Locus tag
LSAT_V11C700343540
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111894555 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 7 NC_056629.2 (3905898..3908106)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 7 NC_056629.1 (3823691..3825834)

Chromosome 7 - NC_056629.2Genomic Context describing neighboring genes Neighboring gene delta(8)-fatty-acid desaturase Neighboring gene protein ABIL1 Neighboring gene probable methyltransferase At1g29790 Neighboring gene RING-H2 finger protein ATL67-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056629.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    3905898..3908106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052765163.1 → XP_052621123.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X1

  2. XM_023890625.3 → XP_023746393.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X2

    UniProtKB/TrEMBL
    A0A9R1X1L7
    Conserved Domains (1) summary
    pfam03407
    Location:124 → 343
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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