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LOC111891787 callose synthase 12 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111891787, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111891787
Gene description
callose synthase 12
Locus tag
LSAT_V11C800442930
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111891787 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 8 NC_056630.2 (231378204..231384092)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 8 NC_056630.1 (218190775..218196221)

Chromosome 8 - NC_056630.2Genomic Context describing neighboring genes Neighboring gene elicitor-responsive protein 3 Neighboring gene uncharacterized LOC111891806 Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC111891804 Neighboring gene uncharacterized LOC111891784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056630.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    231378204..231384092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023887844.2 → XP_023743612.2  callose synthase 12

    UniProtKB/TrEMBL
    A0A9R1X117
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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